Job Description
The Infectious Disease Laboratory Division (IDLD) is currently seeking a highly
motivated Bioinformatics Data Scientist II to join the Genomics Center group. In
this role, you will work collaboratively and cross-functionally with colleagues
to execute Next-Generation Sequencing (NGS) workflows that support the
surveillance, diagnostics, and research efforts of the California Department of
Public Health. We are seeking new group members to contribute to the development
and implementation of computational workflows for DNA sequencing. The position
will collaborate with several multidisciplinary CDPH teams and other internal
and external partners to contribute to CDPH infectious disease research and
surveillance. The ideal candidate should have a broad computational background,
an understanding of molecular and cellular biology, and expertise with
sequencing platforms such as Illumina and Oxford Nanopore. The position is in
Richmond, CA.
Must submit a resume with application.
The salary range for this position is $91,500 -$117,588 annually depending on
experience/qualifications.
Must be able to work flexible hours that may include weekends and holidays.
If hired for this position, applicant will be required to provide proof of full
vaccinated for COVID-19 prior to the start date; or have a valid religious or
medical reason qualifying the applicant for an exemption (that may or may not
require accommodation). The applicant will need to have the qualifying
exemption.
ESSENTIAL FUNCTIONS
* Assist in the development, management, and maintenance of large-scale genomic
databases used to manage workflows used for infectious disease research and
surveillance.
* Critically analyze genomic data to support public health surveillance and
infectious disease outbreak investigations using conventional and innovative
analysis tools.
* Work with internal and external collaborators, including local public health
laboratories and collaborating sequencing laboratories.
* Develop innovative solutions for the interoperability of data systems among
federal, state, and local health departments, commercial and governmental
laboratories, hospitals and medical providers, academic partners, and other
public health entities.
* Collaborate with CDPH response teams, including COVID-19 whole genome
sequence teams, surveillance/epidemiology, outbreak investigations, contact
tracing, policy makers, information technology, and leadership, to enhance
and/or obtain systems for storing, analyzing, reporting, and sharing related
data.
* Conceptualize, coordinate, and produce internal reports and public-facing
materials (e.g., tables and visualizations) that describe/interpret
epidemiologic analysis that influence prevention policy.
- Present at meetings and scientific conferences, if applicable.
- Participate in conference calls with key stakeholders at CDPH, local health
jurisdictions (LHJs), CDC, and academic partners.
- Perform other duties as directed by CDPH Leadership.
- Collaborate effectively with team members.
- Maintain flexibility to work onsite as needed to meet IDLD demands and team
collaboration requirements.
NON-ESSENTIAL FUNCTIONS
* Perform other duties as assigned.
JOB QUALIFICATIONS
* Experience with Next-Generation Sequencing technologies and sequence analysis
tools.
* Ability to code in Python, R, SQL, or similar programming languages with a
focus on clarity, security, deployment, and future maintainability.
* Familiarity with shell scripting and command line usage in Linux
environments.
* Able to present complex results, both verbally and in writing, to
computational and non-computational audiences.
* Knowledge of fundamentals and principles of epidemiology, biostatistics, and
public health.
- High-level analytical and problem-solving skills.
- Demonstrated ability to effectively communicate orally and in writing with
public health and healthcare professionals as well as internal partners.
* Knowledge and application of security and confidentiality requirements for
reportable disease/public health surveillance data and protection of public
health information.
* Ability to prioritize and manage multiple tasks and work well independently
and with a team.
- Demonstrate reliability, integrity, and attention to detail.
- Fluency in spoken and written English is required.
Education/Experience
* B.S. or higher degree in Bioinformatics or a related field, such as Data
Science, statistics, or computer science.
* B.S. or higher degree in Biology/Virology or a related field with significant
bioinformatics experience.
- Experience working in an NGS core facility is highly desirable.
- Strong knowledge of epidemiological/biostatistical methods, genetics, and/or
bioinformatics, preferred.
* Expertise in a programming language such as R, Python, SQL, or a similar
language is required.
- Experience in Bioinformatics and Next Generation Sequencing analysis.
- Excellent written and oral communication skills.
- Ability to build custom tools when needed.
Certificates/Licenses
* None
Other Skills, Knowledge, and Abilities
* Experience with cloud computing and maintenance of cloud-based infrastructure
is preferred.
* Knowledge and/or experience in microbiology, virology, and molecular biology
is preferred.
* Familiar with public genomic databases and resources (NCBI, GISAID, Ensembl,
etc.).
- Knowledge and understanding of elements of data governance.
- Knowledge of and skilled in the use of Microsoft Office products, including
Word, Excel, Outlook, Teams, and PowerPoint.
PHYSICAL DEMANDS
- Stand: Occasionally
- Walk: Occasionally
- Sit: Frequently
- Handling / Fingering: Frequently
- Reach Outward: Occasionally
- Reach Above Shoulder: Occasionally
- Climb, Crawl, Kneel, Bend: Occasionally
- Lift / Carry: Occasionally - Up to 30 lbs
- Push/Pull: Occasionally - Up to 50 lbs
- See: Constantly
- Taste/ Smell: Not Applicable
KEY
- Not Applicable = Not required for essential functions
- Occasionally = (0 - 2 hrs/day)
- Frequently = (2 - 5 hrs/day)
- Constantly = (5+ hrs/day)
WORK ENVIRONMENT
General office and laboratory setting, indoors, temperature-controlled
EEOC STATEMENT
It is the policy of Heluna Health to provide equal employment opportunities to
all employees and applicants, without regard to age (40 and over), national
origin or ancestry, race, color, religion, sex, gender, sexual orientation,
pregnancy or perceived pregnancy, reproductive health decision making, physical
or mental disability, medical condition (including cancer or a record or history
of cancer), AIDS or HIV, genetic information or characteristics, veteran status
or military service.
Job Tags
Work at office, Local area, Flexible hours